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TEACHING:

Autumn 2010-2011: BIO 23N – “FACEBUG: The social life of microbes”
We will explore three crucial aspects of microbial life. First, examine how the unseen microbial majority is responsible for critical but under-appreciated aspects of the biology of the planet. Second, investigate the array of current genomic and imaging tools available to probe microscopic organisms in the environment.  Last, we will research the importance of microbial communities and social dynamics in ecological and human health settings. (Image courtesy Ilina BG)

 

Autumn 2008-2009: “Microbes, Mysteries and Metagenomics
Microbes, the unseen majority in the world, but only in the last decades have methods been developed to investigate their diversity. How are these new technologies shaping appreciation of microbial diversity? Discoveries in genomics and metagenomics, and the interfaces among bioinformatics, evolutionary biology, and synthetic biology. Emphasis is on microbes in the environment and current ability to dissect the interactions of complex microbial communities. (Image: Class of 2008)
 

 

DATABASES AND BIOINFORMATICS TOOLS

PROTOCOLS FOR MANIPULATING BIOLOGICAL DATA
MOBYLE
BIOINFORMATICS TOOLS
COLLABORATIVE GENOME ANALYSIS
A COLLECTION OF 371 PATHWAY/GENOME DATABASES
CRISPR FINDER
CYANOBASE: A GENOME DATA BASE FOR CYANOBACTERIA
EUROPEAN BIOINFORMATICS INSTITUTE
EBI TOOLS
GENEDOC : MULTIPLE SEQUENCE ALIGNMENT EDITOR
GOLD: GENOMES ONLINE
INTEGRATED MICROBIAL GENOMES
JOINT GENOME INSTITUTE
KEGG KYOTO ENCYCLOPEDIA OF GENES AND GENOMES
METABOLIC ENCYCLOPEDIA
NCBI
NCBI BLAST
ORF FINDER
SMART
PRIMER DESIGN

SCIENCE EDUCATION

HOW IT WORKS
EDUCATIONAL SITES FOR ALL AGES
SCIENCE FOR KIDS
CONVERSION FACTORS
PCR PROTOCOLS
VIRTUAL BIOLOGY TEXTS
MOLECULAR BIOLOGY VIRTUAL TEXT
THE SCIENTIST
DIGITAL LIBRARY FOR TEACHING
NASA
ENCYCLOPEDIA FOR LIFE
DARWIN SITES
REDISCOVERING BIOLOGY
OPTICAL ILLUSIONS

STANFORD LINKS

BIOLOGY RESEARCH FOR UNDERGRADS
BIOX
CHEMICAL WASTE PICKUP
STANFORD LIBRARIES
STANFORD COMPUTING
STANFORD COURSEWORK
STANFORD AXESS
CMGM
STANFORD HEALTH AND SAFETY
UNDERGRADUATE RESEARCH OPPORTUNITIES AT STANFORD
MICROBIAL BIOLOGY AT STANFORD

MICROBES

AMERICAN SOCIETY FOR MICROBIOLOGY
BACTERIOLOGY TEXTBOOK ONLINE
BROCK, THOMAS D. THERMOPHILIC MICROORGANISMS AND LIFE AT HIGH TEMPERATURES
MICROBIOLOGY: GENERAL
MICROBIAL LIFE IN EXTREMELY HOT ENVIRONMENTS
MICROBE PROJECT
USGS PUBLICATIONS
VIMSS VIRTUAL INSTITUTE FOR MICROBIAL STRESS AND SURVIVAL

THE MENAGERIE

ARTS AND LETTERS DAILY
NEWS FROM INDIA
SCOUT REPORT
MANDARIN TOOLS
POETRY
THE BRITISH LIBRARY
THE LIBRARY OF CONGRESS
DIGITAL ARCHIVES
ENCYCLOPEDIA BRITANNICA
OXFORD DICTIONARY
UNION OF CONCERNED SCIENTISTS
DOCTORS WITHOUT BORDERS
MIDDLE EAST CHILDREN’S ALLIANCE
GLOBAL GATEWAY
GRANTA
NEW YORK REVIEW OF BOOKS